We present the BioNumPy package, which enables efficient and intuitive array programming on biological data in Python. Internally, this is handled by a ragged data structure (similar to that in ref. 4 ...

NumPy is known for being fast, but could it go even faster? Here’s how to use Cython to accelerate array iterations in NumPy. NumPy gives Python users a wickedly fast library for working with data in ...

Now you can have Cython’s speed boost without its cumbersome syntax, using the pure Python syntax you know and love. Cython has long been one of the great secret weapons of Python performance, letting ...

This repository contains the Cythonized code for the Go-ICP algorithm (with trimming strategy for outlier handling). It is free software under the terms of the GNU General Public License (GPL) v3.

State-of-the-art software tools for neuronal network simulations scale to the largest computing systems available today and enable investigations of large-scale networks of up to 10 % of the human ...

Cython* is a superset of Python* that additionally supports C functions and C types on variable and class attributes. Cython is used for wrapping external C libraries that speed up the execution of a ...

Last month, Adina Howe took up a post at Iowa State University in Ames. Officially, she is an assistant professor of agricultural and biosystems engineering. But she works not in the greenhouse, but ...

Cython is used to build C extensions that provide bindings against GDAL and additional optimizations for performant functions accessible from Python. cdef extern from "gdal_alg.h": int GDALPolygonize( ...

Diffusion Imaging in Python (Dipy) is a free and open source software project for the analysis of data from diffusion magnetic resonance imaging (dMRI) experiments. dMRI is an application of MRI that ...